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City Seattle / / Company Bioinformatics Solutions Inc. / Cons Limited / / Country Switzerland / Germany / Canada / / / Facility Singapore Institute / Pipeline TPP Proteomatic OpenMS/TOPP Pros Very / National University of Singapore / Trans Proteomics Pipeline / OpenMS pipeline / / / IndustryTerm context-specific networks / data meta-processing / less streamlined/current software suite / workflow using networks / semi-supervised learning algorithms / non-bundled database search algorithms / library search / software tools / context-specific differential networks / decoy-search strategies / representative software / database search / artificial networks / data mining / software modules / sub-networks / limma/ranked product / proteomic processing / software options²no conversion / search algorithms²e.g / search algorithms / quality reference networks / de novo sequencing software / software suites / software library / software suite / reference systems / pipeline using existing software / software options / software environment / identification software packages / peptide search engines / built-in algorithms / reference network / search results / database search algorithm score / chemical modifications / / OperatingSystem UNIX / Linux / Microsoft Windows / / Organization National University of Singapore / Singapore Institute for Clinical Sciences / Department of Physiology / Institute for Systems Biology / US Federal Reserve / School of Computing / Agency for Science and Technology / / Person Wilson Wen Bin Goh / Judy Chia Ghee Sng / / / Position biologist / Author / major driver / representative / / ProgrammingLanguage V / C++ / / ProvinceOrState Mississippi / / Technology genomics / proteomics / Linux / non-bundled database search algorithms / OLEUDULHV DQG HVWDEOLVKLQJ ³JROG VWDQGDUGV´ IRU HYDOXDWing search algorithms / DNA Chip / gene expression / built-in algorithms / semi-supervised learning algorithms / data mining / GUI / / URL www.mdpi.com/journal/biology / / SocialTag 
biology[removed]final-done.pdf